computational tools template
Annotations for computational tools on the ELITE Portal [Download]
| Attribute | Description | Required | columnType | DependsOn | Source | Parent | Valid Values |
|---|---|---|---|---|---|---|---|
| program | True | STRING | Sage Bionetworks | ManifestColumn | ELITE,AD | ||
| resourceType | The type of resource being stored and annotated | True | STRING | Sage Bionetworks | ManifestColumn | experimentalData,metadata,tool,analysis,computationalNotebook,softwareTool,Not assigned | |
| contributor | True | STRING | Sage Bionetworks | ||||
| displayName | Canonical tool name provided by the tool developer or service provider | True | STRING | Sage Bionetworks | |||
| documentation | True | STRING | Sage Bionetworks | ||||
| grants | Grant number associated with the tool's development. Multiple values permitted, comma separated. | True | STRING | Sage Bionetworks | |||
| institution | False | STRING | Sage Bionetworks | ||||
| isFeatured | False | BOOLEAN | |||||
| project | The ELITE project short name associated with the tool | True | STRING | Sage Bionetworks | |||
| summary | Textual description of the tool | True | STRING | Sage Bionetworks | |||
| softwareType | True | STRING | Sage Bionetworks | ||||
| toolAccessibility | Whether there are non-monetary restrictions on accessing an online service | False | STRING | biotoolsschema | |||
| toolCmd | Relevant command, command-line fragment, or option for executing this function/running the tool in this mode | False | STRING | biotoolsschema | |||
| toolComputeRequirements | Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime) | False | STRING | schema.org | |||
| toolCost | Monetary cost of acquiring the software | False | STRING | biotoolsschema | |||
| toolDateLastModified | The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information | False | STRING | schema.org | |||
| toolDocumentationNote | Comment about the documentation | False | STRING | biotoolsschema | |||
| toolDocumentationType | Type of documentation that is linked to. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolDocumentationUrl | Link to documentation on the web for the tool | False | STRING | biotoolsschema | |||
| toolDoi | The Digital Object Identifier (DOI) associated with the computational tool | True | STRING | Sage Bionetworks | |||
| toolDownloadNote | Comment about the download | False | STRING | biotoolsschema | |||
| toolDownloadType | The type of data, information, or system that is obtained when the link is resolved | False | STRING | biotoolsschema | |||
| toolDownloadUrl | Link to download (or repo providing a download) for the software | False | STRING | biotoolsschema | |||
| toolDownloadVersion | Version information (typically a version number) of the software applicable to this download | False | STRING | biotoolsschema | |||
| toolEntityName | Name of the entities that may be credited | False | STRING | biotoolsschema | |||
| toolEntityRole | Role performed by entity that is credited e.g. Developer | True | STRING | biotoolsschema | |||
| toolEntityType | Types of entities that may be credited e.g. Person | True | STRING | biotoolsschema | |||
| toolFunctionNote | Concise comment about this function, if not apparent from the software description and EDAM annotations | False | STRING | biotoolsschema | |||
| toolHomepage | Homepage of the software, or some URL that best serves this purpose | True | STRING | biotoolsschema | |||
| toolInputData | Type of primary input data. Multiple values permitted, comma separated | True | STRING | biotoolsschema | |||
| toolInputFormat | Allowed format(s) of the input data. Multiple values permitted, comma separated | True | STRING | biotoolsschema | |||
| toolLanguage | Name of programming language the software source code was written in. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolLicense | Software or data usage license. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolLinkNote | Comment about the link | False | STRING | biotoolsschema | |||
| toolLinkType | The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolLinkUrl | A link of some relevance to the software (URL) | False | STRING | biotoolsschema | |||
| toolOperatingSystem | The operating system supported by a downloadable software package. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolOperation | The basic operation(s) performed by this software function. Multiple values permitted, comma separated | True | STRING | biotoolsschema | |||
| toolOutputData | Type of primary output data. Multiple values permitted, comma separated | True | STRING | biotoolsschema | |||
| toolOutputFormat | Allowed format(s) of the output data. Multiple values permitted, comma separated | True | STRING | biotoolsschema | |||
| toolPackageDependencies | Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment | False | STRING | CWL | |||
| toolPackageDependenciesPresent | Indicates whether the required package dependencies for tool are present | True | BOOLEAN | CWL | |||
| toolPubmedId | The pubMed identifer associated with the development of the tool | False | STRING | Sage Bionetworks | |||
| toolReleaseDate | The release date of a product or product model. This can be used to distinguish the exact variant of a product | True | STRING | schema.org | |||
| toolTopic | General scientific domain the software serves, or other general category. Multiple values permitted, comma separated | False | STRING | biotoolsschema | |||
| toolType | A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated | True | STRING | Sage Bionetworks | |||
| toolVersion | Version information (typically a version number) of the software applicable to this entry | False | STRING | biotoolsschema |