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assay phenotype human template

Template for Phenotype_human [Source]

Attribute Description Required columnType DependsOn Source Parent Valid Values
diagnosisStatus Whether the individual has been diagnosed with a condition or disease (physical and/or cognitive), \True" indicates the individual has been diagnosed" True STRING ManifestColumn FALSE,TRUE
ethnicGroupCode A coded value specifying the self-declared ethnic origination independent of racial origination, provided by the data contributor's data dictionary False STRING ManifestColumn
speciesGroup The taxonomic ranking including both species and subspecies the individual belongs to. True STRING ManifestColumn Bird,Human,Mammal,Not applicable,Not collected,Not specified,Other,Primate,Rodent,Unknown
Component False
Filename False
diagnosis Indicate the disease or condition. False STRING sage.annotations-experimentalData.diagnosis-0.0.12 ManifestColumn AD-DS, Affective Disorder, Alzheimer Disease, Alzheimer disease with psychosis, amyotrophic lateral sclerosis, anxiety, Autism Spectrum Disorder, Bipolar Disorder, Bladder Cancer, Brain Cancer, Breast Cancer, Cervical Cancer, Colon Cancer, control, corticobasal degeneration disorder, CS-DS, dementia, dystonia, essential tremor, Fibrocystic Breast Disease, frontotemporal dementia, gliosis, hypoxia, Juvenile Myelomonocytic Leukemia, Leukemia, Lewy body disease, Lung Cancer, Major Depressive Disorder, MCI-DS, mild cognitive impairment, multiple system atrophy, Neurofibromatosis 1, Neurofibromatosis 2, no cognitive impairment, Not Applicable, obesity, obsessive compulsive disorder, Ovary Cancer, Pancreatic Cancer, Parkinson's disease, pathological aging, progressive supranuclear palsy, Prostate Cancer, Schizophrenia, Skin Cancer, Substance Related Disorder, Tourette Syndrome, traumatic brain injury, type 2 diabetes mellitus, vascular dementia, Williams Syndrome
ethnicity Ethnicity of individual True STRING sage.annotations-demographics.ethnicity-0.0.2 ManifestColumn Hispanic or Latino,Not Hispanic or Latino,Prefer not to answer
race Race of individual True STRING sage.annotations-demographics.race-0.0.2 ManifestColumn American Indian or Alaska Native,Asian,Black or African American,Multiracial,Native Hawaiian or Pacific Islander,Prefer not to answer,White
sex The biological sex of the individual True STRING sage.annotations-experimentalData.sex-0.0.2 ManifestColumn Female,Male,Not applicable,Not collected,Not specified,Other,Unknown
age Age of the individual (age in years of the individual at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.) True STRING ManifestColumn
cohort Name of the cohort the individual belongs to True STRING http://purl.obolibrary.org/obo/NCIT_C61512,http://purl.obolibrary.org/obo/STATO_0000203 ManifestColumn ABC-DS, ACT, ADNI, Banner, BEB-Miller, BLSA, CHDWB, CLINCOR, DiCAD, EHBS, Emory ADRC, Framingham, HBTRC, HPGP, HUP, LBP, MARS, MAYO, MC, MCJ, MCR, MSBB, NYBB, Pitt ADRC, RADC, ROSMAP, SMRI, UK Biobank, UPBB, UPenn, UW ADRC,ABC-DS,ACT,ADNI,Banner,BEB-Miller,Biggs Institute Brain Bank,BLSA,CHDWB,CLINCOR,Columbia ADRC,DiCAD,EFIGA,EHBS,Emory ADRC,FBS,Framingham,HBCC,HBTRC,HPGP,HUP,LBP,MARS,Mayo Clinic,MC,MCJ,MCR,MSBB,NYBB,Pitt ADRC,RADC,ROSMAP,SMRI,UFL,UK Biobank,UPBB,UPenn,UW ADRC,WHICAP
individualID Identifying string linked to the individual or animal being studied, provided by the data contributor True STRING sage.annotations-experimentalData.individualID-0.0.2 ManifestColumn